Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Max

Cell type

Cell type Class
Lung
Cell type
Lung cancer
NA
NA

Attributes by original data submitter

Sample

source_name
Control Kras G12D Trp53 -/- lung cancer cells
genotype
derived from Kras G12D Trp 53 -/- tumors
antibody
MAX IP
transduction
sgCtrl preSC

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked in formaldehyde and ChIP was performed Libraries were constructed using the NEB Ultra II kit for Illumina according to manufacturer protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
16831531
Reads aligned (%)
92.6
Duplicates removed (%)
7.7
Number of peaks
10399 (qval < 1E-05)

mm9

Number of total reads
16831531
Reads aligned (%)
92.4
Duplicates removed (%)
8.4
Number of peaks
10332 (qval < 1E-05)

Base call quality data from DBCLS SRA